From elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it Tue Sep 4 10:58:53 2018 From: elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it (General ELIXIR-Italy Mailing list) Date: Tue, 4 Sep 2018 10:58:53 +0200 Subject: [ELIXIR-ITA_ml] Human Variation survey Message-ID: Cari colleghi nell'ambito dell'implementation study Human Variation coordinato da Mats Lindsted (nodo Elixir Finlandese) abbiamo redatto un survey finalizzato alla comprensione di quanto siano note e vengano utilizzate le infrastrutture, le risorse e i protocolli a supporto dell'annotazione di varianti genomiche umane. In allegato una lettera di presentazione del Survey. Dalla lettera si risale al link che NE consente la compilazione. Come descritto nella lettera allegata il survey è stato redatto dai componenti di nodi Elixir che partecipano all'implementation study. Il Survey si chiude il 30 settembre. A nome del gruppo proponente, ringraziando in anticipo Marcella Attimonelli Associate professor in Bioinformatics Dept of Biosciences, Biotechnology and Biopharmaceutics University of Bari -Italy Via E.Orabona 4 70126 Bari (IT) Tel +390805443308, 5442399, 5442384 e-mail marcella.attimonelli a uniba.it , attimonellimarcella a gmail.com cell +393285686052 -------------- parte successiva -------------- Un allegato HTML è stato rimosso... URL: -------------- parte successiva -------------- Un allegato non testuale è stato rimosso.... Nome: HumanVariationElixirSurvey-Coverletter_elixir-it.pdf Tipo: application/pdf Dimensione: 54603 bytes Descrizione: non disponibile URL: From elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it Mon Sep 10 07:17:25 2018 From: elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it (General ELIXIR-Italy Mailing list) Date: Mon, 10 Sep 2018 07:17:25 +0200 Subject: [ELIXIR-ITA_ml] Fwd: Human Variation survey In-Reply-To: References: Message-ID: A tutti i componenti della mailing list Elixir Qui di seguito riporto una mail inviata in data 4 Agosto in cui invitavo coloro che sono coinvolti in ricerche riguardanti "Human Variability" a compilare un survey sulla conoscenza e l'utilizzo di risorse inerenti il tema genomica umana. Il termine ultimo per la compilazione è fissato al 30 settembre e la compilazione richiede non più di 15 minuti, augurandomi feedback positivi, auguro buona settimana a tutti. Marcella Attimonelli ---------- Forwarded message --------- Marcella Attimonelli Date: mar 4 set 2018 alle ore 10:58 Subject: Human Variation survey To: Cari colleghi nell'ambito dell'implementation study Human Variation coordinato da Mats Lindsted (nodo Elixir Finlandese) abbiamo redatto un survey finalizzato alla comprensione di quanto siano note e vengano utilizzate le infrastrutture, le risorse e i protocolli a supporto dell'annotazione di varianti genomiche umane. In allegato una lettera di presentazione del Survey. Dalla lettera si risale al link che NE consente la compilazione. Come descritto nella lettera allegata il survey è stato redatto dai componenti di nodi Elixir che partecipano all'implementation study. Il Survey si chiude il 30 settembre. A nome del gruppo proponente, ringraziando in anticipo Marcella Attimonelli Associate professor in Bioinformatics Dept of Biosciences, Biotechnology and Biopharmaceutics University of Bari -Italy Via E.Orabona 4 70126 Bari (IT) Tel +390805443308, 5442399, 5442384 e-mail marcella.attimonelli a uniba.it , attimonellimarcella a gmail.com cell +393285686052 -------------- parte successiva -------------- Un allegato HTML è stato rimosso... URL: -------------- parte successiva -------------- Un allegato non testuale è stato rimosso.... Nome: HumanVariationElixirSurvey-Coverletter_elixir-it.pdf Tipo: application/pdf Dimensione: 54603 bytes Descrizione: non disponibile URL: From elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it Mon Sep 10 12:15:58 2018 From: elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it (General ELIXIR-Italy Mailing list) Date: Mon, 10 Sep 2018 12:15:58 +0200 Subject: [ELIXIR-ITA_ml] BBCC2018 - call for abstracts In-Reply-To: <94e405e8-c5bb-f660-50dd-057f6413deaf@ibiom.cnr.it> References: <0626FEB5-D77F-4912-ADBC-797B534BC888@elixir-europe.org> <94e405e8-c5bb-f660-50dd-057f6413deaf@ibiom.cnr.it> Message-ID: I forward the following call to whom it may concern. Apologies for multiple posting. ------------- *BBCC2018 - Bioinformatics and Computational Biology International Conference** **November 19th-21th, 2018, Naples, Italy* _*Submission is open - Deadline for submission: September 19th, 2018*_ The Call for Contributions to the 13th edition of BBCC Conference is available at the following link: http://www.bbcc-meetings.it/wp-content/uploads/2018/07/First-Call-For-Contributions-BBCC2018-28-07.pdf _Instructions for Authors are at the link_: http://www.bbcc-meetings.it/submit-your-contribution/instructions/ Please visit the web site of the conference http://www.bbcc-meetings.it for more information about venue, program and invited speakers, committees. _Invited Speakers (confirmed)_ Prof. Christian Blum, Artificial Intelligence Research Institute (IIIA), Spanish National Research Council (CSIC), Bellaterra ? Catalonia, Spain Dr. Roberta Bosotti, Genomics Group Leader and Head of NGS Unit, Biotechnology Dept. ? Nerviano Medical Sciences srl, Nerviano (MI), Italy Prof. Enrico Capobianco, Center for Computational Science, University of Miami, Florida, USA Prof. David Gilbert ? Professor in Computer Science, Brunel University London, UK Prof. Christine Orengo ? Professor of Bioinformatics, University College of London, London UK _Deadlines:_ _*SEPTEMBER 19TH, 2018: LAST DAY FOR SUBMISSION (BOTH ORAL PRESENTATIONS AND SHORT COMMUNICATIONS/POSTERS)*_ September 30th, 2018: Opening registration October 10th, 2018: Program announcement October 19th, 2018: Early registration closed November 19-21th, 2018: Conference See you in Naples at BBCC2018! Angelo Facchiano BBCC Chair ______________________________________________ Anna Marabotti, Ph.D. Assistant Professor Department of Chemistry and Biology "A. Zambelli" University of Salerno Via Giovanni Paolo II, 132 84084 Fisciano (SA) Italy Phone: +39 089 969583 Fax: +39 089 969603 E-mail: amarabotti a unisa.it Skype: annam1972 Web page: http://docenti.unisa.it/anna.marabotti -------------- parte successiva -------------- Un allegato HTML è stato rimosso... URL: From elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it Tue Sep 11 14:57:06 2018 From: elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it (General ELIXIR-Italy Mailing list) Date: Tue, 11 Sep 2018 12:57:06 +0000 Subject: [ELIXIR-ITA_ml] NETTAB 2018: Call for posters and software demoes - deadline is approaching Message-ID: Dear all, this is reminder that the deadline for the submission of abstracts for posters for next NETTAB 2018 workshop is set to next Sunday September 16, 2018. See the Instructions for authors here below. Devoted to the FAIR approach, tools and applications in bioinformatics, it is for sure one of the best programmes set up for a NETTAB workshop. I invite everybody to have a careful look at the programme at http://www.igst.it/nettab/2018/programme/scientific-programme/ . Here is a quick summary of the programme. KEYNOTE TALKS * Are we FAIR yet? And will it be worth it? Michel Dumontier, University of Maastricht, The Netherlands * FAIR data, tools and workflows: a user perspective Frederik Coppens, VIB, University of Gent, Belgium, & ELIXIR Belgium * ELIXIR Core Data Resources: FAIR, community and impact Christine Durinx, Swiss Institute of Bioinformatics, Switzerland * Challenges in adopting FAIR principles in Training Patricia Palagi, Swiss Institute of Bioinformatics, Switzerland GUEST TALKS * Paradigm shifts in health informatics needed for leveraging FAIR data environments Amnon Shabo, The International Academy of Health Sciences Informatics * A FAIR approach to Research Data Stewardship and Data Stewardship Planning - Guest Lecture Rob Hooft, Dutch Techcentre for Life Sciences - DTLS, The Netherlands * BioExcel & ELIXIR: towards interoperable and reproducible biomolecular research workflows Adam Hospital, IRB Barcelona, Spain * FAIR data and EOSC: Strategy for finding and accessing datasets at EOSC Rafael Jimenez, ELIXIR Europe, United Kingdom * Standards and SOP implementation in the life-sciences research: a snapshot from the CA CHARME Domenica D'Elia, CNR/ITB, Bari, Italy * From rare to FAIR data in the rare disease community Marco Roos, Leiden University Medical Centre - LUMC, The Netherlands TUTORIALS * Bioschemas, a lightway approach to enable FAIRer data resources Leyla Jael Garcia Castro, Ricardo Arcila, Rafael Jimenez, Victoria Dominguez del Angel Organized in collaboration with ELIXIR. * The ELIXIR Data Stewardship Wizard - how to guide life science researchers towards FAIR data management Rob Hooft, Vojt?ch Knaisl, Jan Slifka Organized by ELIXIR-NL and ELIXIR-CZ. SATELLITE EVENT * Adopting Open Source Software FAIR Practices Allegra Via and Mateusz Kuzak Organized by ELIXIR-IIB I hope that many of you will take this occasion to present their work and I'm looking forward to meeting you in Genoa soon. All the best. Paolo Romano === NETTAB 2018 Building a FAIR Bioinformatics environment Genova, October 22-24, 2018 Instructions for authors Abstracts for posters and software demonstrations must be submitted as PDF files through EasyChair at https://easychair.org/conferences/?conf=nettab2018 . Accepted abstracts must then be revised and resubmitted for inclusion in the Proceedings. No Copyright form or permission is required for abstracts, since proceedings won't be officially published. Authors of all works presented at the workshop will be invited to a Call for papers for a Special Issue in an International Journal with IF. Instructions for the preparation of the abstract: * page size: A4; all margins: 2cm; paragraphs justified; single line spacing * font: Arial (or Helvetica); sizes: title 14pts; authors' names 11pts; affiliations 10pts; section headings 12pts; body text 11pts; bibliography 10pts * length: max 2 pages for posters and software demos * sections: Introduction, Methods, Results, Conclusions (omit for posters and software demos), References * tables and figures: include one per type, only when needed Templates Templates for MS Word and LaTeX (renamed as txt for security reasons) are available at http://www.igst.it/nettab/2018/submissions/instructions-for-authors/ . Deadline are due within Sunday September 16, 2018. A short delay may be acceptable, please get in touch wit the organizers at nettab.workshops a gmail.com . Instructions for the preparation of posters The maximum poster size is A1 in portrait format, i.e. 84,1 cm (height) x 59,4 cm (width). Note that posters will be displayed on a limited number of panels: it is essential that all posters are printed in the appropriate format. Presenters are invited to attend their poster when possible and to leave their contact information near to the poster. Paolo Romano Ospedale Policlinico San Martino Genova, Italy Skype: p.romano Email: paolo.romano a hsanmartino.it - paolo.dm.romano a gmail.com -------------- parte successiva -------------- Un allegato HTML ? stato rimosso... URL: From elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it Wed Sep 19 09:33:10 2018 From: elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it (General ELIXIR-Italy Mailing list) Date: Wed, 19 Sep 2018 09:33:10 +0200 Subject: [ELIXIR-ITA_ml] Nuova Community ELIXIR "Microbial Biotechnology" Message-ID: <642ac75e-d36c-fd3b-1693-e5438c4f0c65@ibiom.cnr.it> Cari tutti, lo scorso 8 settembre si è svolto il primo meeting di un gruppo di lavoro sulle biotecnologie microbiche con l'intenzione di formare una nuova ELIXIR Community sul tema. A questo indirizzo trovate l'agenda: https://docs.google.com/document/d/1UwbREBd2T00gdLHg2AWtt72oGZf2PIwcCbFRvL3Q2QU/edit mentre a questo le minute e gli appunti per la stesura del white paper necessario all'istituzione di ogni nuova community: https://docs.google.com/document/d/1nctY1GYqlFIMeziDW6YIhsgVcbrgiZqsOeONCr4c0hY/edit Chi fosse interessato a partecipare ai lavori può contattare entro questo venerdì 21 settembre me e Graziano, indicando l'eventuale contributo che si vorrebbe portare. In base alle dichiarazioni di interesse ricevute cercheremo di organizzare il contributo italiano alla nuova community. Siete invitati a far circolare il messaggio a chi pensiate possa essere interessato all'interno del Nodo. Cordiali saluti, F. -- ============================================ Federico Zambelli, Ph.D. ELIXIR-IIB Technical Coordinator Bioinformatics, Evolution and Comparative Genomics Lab, Dept. of Biosciences - www.bioscienze.bio University of Milano - Italy Our comforting conviction that the world makes sense rests on a secure foundation: our almost unlimited ability to ignore our ignorance. ============================================ From elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it Thu Sep 20 14:15:36 2018 From: elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it (General ELIXIR-Italy Mailing list) Date: Thu, 20 Sep 2018 14:15:36 +0200 Subject: [ELIXIR-ITA_ml] Fwd: BBCC2018 - deadline for abstract POSTPONED and further news In-Reply-To: <096d1403-c4ba-4d9d-7f87-6acb06aebfce@unisa.it> References: <096d1403-c4ba-4d9d-7f87-6acb06aebfce@unisa.it> Message-ID: I forward the following call to whom it may concern. Apologies for multiple posting. Anna Marabotti ---------------------------- *BBCC2018 - Bioinformatics and Computational Biology International Conference November 19th-21th, 2018, Naples, Italy* *NEW: PeerJ Award for the ?Best Contribution by an Early Career Researcher? at BBCC2018**** **NEW: Deadline for submission _postponed to September 30th_, 2018 to increase participation to the PeerJ Award** * The *deadline for submission has been extended to September 30th*, to give more opportunities of participation to the PeerJ Award for the ?Best Contribution by an Early Career Researcher? at BBCC2018. https://peerj.com/blog/post/115284880869/bbcc2018-call-for-contributions-and-award-announcement/* * The Call for Contributions to the 13th edition of BBCC Conference is available at the following link: https://www.bbcc-meetings.it/wp-content/uploads/2018/09/Second-Call-For-Contributions-BBCC2018-09-15.pdf Instructions for Authors are at the link: http://www.bbcc-meetings.it/submit-your-contribution/instructions/ Please visit the web site of the conference http://www.bbcc-meetings.it for more information about venue, program and invited speakers, committees. See you in Naples at BBCC2018! Angelo Facchiano BBCC Chair -- ______________________________________________ Anna Marabotti, Ph.D. Assistant Professor Department of Chemistry and Biology "A. Zambelli" University of Salerno Via Giovanni Paolo II, 132 84084 Fisciano (SA) Italy Phone: +39 089 969583 Fax: +39 089 969603 E-mail:amarabotti a unisa.it Skype: annam1972 Web page:http://docenti.unisa.it/anna.marabotti -------------- parte successiva -------------- Un allegato HTML è stato rimosso... URL: From elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it Mon Sep 24 11:06:20 2018 From: elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it (General ELIXIR-Italy Mailing list) Date: Mon, 24 Sep 2018 11:06:20 +0200 Subject: [ELIXIR-ITA_ml] =?utf-8?q?Fwd=3A_seconda_locandina-prendi_ci?= =?utf-8?q?=C3=B2_che_serve?= In-Reply-To: References: <62703BB2-F9BB-4A15-8415-61D52055BF95@ibiom.cnr.it> Message-ID: Agli interessati Inoltro la locandina finale dell'intervento supportato da Elixir-IIB alla Notte Europea dei Ricercatori in collaborazione con il progetto ERN-Apulia, e raccomando di diffondere l'informazione nei modi più opportuni. Saluti Anna Marabotti -- _______________________________________________________________ Anna Marabotti, Ph.D. Assistant Professor Department of Chemistry and Biology "A. Zambelli" University of Salerno Phone: +39 089 969583 Fax: +39 089 969603 Skype: annam1972 E-mail: amarabotti a unisa.it -- _______________________________________________________________ Anna Marabotti, Ph.D. Assistant Professor Department of Chemistry and Biology "A. Zambelli" University of Salerno Phone: +39 089 969583 Fax: +39 089 969603 Skype: annam1972 E-mail: amarabotti a unisa.it -------------- parte successiva -------------- Un allegato HTML è stato rimosso... URL: -------------- parte successiva -------------- Un allegato non testuale è stato rimosso.... Nome: Bozza de leo_pseudoscienza.jpeg Tipo: image/jpeg Dimensione: 89220 bytes Descrizione: non disponibile URL: