From elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it Mon Nov 13 10:46:39 2017 From: elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it (General ELIXIR-Italy Mailing list) Date: Mon, 13 Nov 2017 10:46:39 +0100 Subject: [ELIXIR-ITA_ml] Fwd: [Rare-disease-community] ELIXIR Webinar: Transfer of large volumes of human data between EGA and the Cloud In-Reply-To: References: Message-ID: <0bc7d617-4b0e-d142-53ff-4dd3359d1f7f@ibiom.cnr.it> Dear all, This is a reminder of ELIXIR webinar with the Compute Platform, which will showcase how ELIXIR supports the transfer of large volumes of confidential, electronic, human data while maintaining appropriate access rights. The webinar will take place on Monday 13 November at 15.30 CET (14.30 GMT), you can join via https://meetings.webex.com/collabs/#/meetings/detail?uuid=M9AZ3SS9UDCUAIH6KXT7L1QRRO-LRGH&rnd=581038.85235 The webinar is open to all, it would be great if you could distribute the link to anyone who might be interested. More information: https://www.elixir-europe.org/events/elixir-webinar-transfer-large-volume-data Many thanks in advance! Best wishes § Susheel -------------- parte successiva -------------- _______________________________________________ Rare-disease-community mailing list Rare-disease-community a elixir-europe.org https://lists.elixir-europe.org/mailman/listinfo/rare-disease-community From elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it Thu Nov 16 12:38:56 2017 From: elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it (General ELIXIR-Italy Mailing list) Date: Thu, 16 Nov 2017 12:38:56 +0100 Subject: [ELIXIR-ITA_ml] Galaxy Admin Workshop in Oslo: January 2018 Message-ID: <1F328028-8F01-459C-809D-A842863A9CBC@uniroma1.it> Per gli appassionati di Galaxy. Fate girare a chi pensate possa essere interessato. Saluti, Allegra ________________________________________ Fra: galaxy-wg-bounces a elixir-europe.org > på vegne av Björn Grüning > Sendt: 10. november 2017 12:39 Til: galaxy-wg a elixir-europe.org Emne: [Galaxy-wg] Galaxy Admin Workshop in Oslo: January 2018 Hi all, we are proud to announce the Galaxy Admin workshop Oslo! https://www.elixir-europe.org/events/european-galaxy-administrator-workshop Please forward this to your regional people :) Thanks a lot and a great November! Bjoern _______________________________________________ Galaxy-wg mailing list Galaxy-wg a elixir-europe.org https://lists.elixir-europe.org/mailman/listinfo/galaxy-wg _______________________________________________ Training-coordinators mailing list Training-coordinators a elixir-europe.org Allegra Via, PhD ELIXIR-IIB Training Coordinator IBPM-CNR c/o Department of Biochemical Sciences "A. Rossi Fanelli" Sapienza University, Rome, IT | +393291535017 allegra.via a uniroma1.it | allegra.via a gmail.com | allegra.via a cnr.it Skype: allegra.via | https://allegravia.github.io/website/ -------------- parte successiva -------------- Un allegato HTML è stato rimosso... URL: From elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it Mon Nov 20 16:38:17 2017 From: elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it (General ELIXIR-Italy Mailing list) Date: Mon, 20 Nov 2017 16:38:17 +0100 Subject: [ELIXIR-ITA_ml] Training Course on Linux shell scripting for high-throughput biological data processing on supercomputers In-Reply-To: References: Message-ID: <338272d0-db7a-32a0-75bd-7035998c6fe9@ibiom.cnr.it> COURSE ANNOUNCEMENT Please circulate this email to those who might be interested. ELIXIR-IIB, in collaboration with CINECA, is pleased to announce the upcoming training course on ?Linux shell scripting for high-throughput biological data processing on supercomputers?. IMPORTANT DATES: Deadline for applications: 20 Dec 2017 Course date: 16-17 Jan 2018 A maximum of 20candidates will be selected based on their need for the course as emerging from the application form. Notifications of acceptance will be sent shortly after the application until we reach 20 participants. Priority will be given to candidates from ELIXIR-IIB member institutions and ELIXIR nodes. VENUE: CINECA, Via dei Tizii, 6B, 00185 Rome, Italy. Full details at: https://elixir-iib-training.github.io/website/2018/01/16/Linux-Shell-Roma.html COURSE DESCRIPTION: Biological big data increasingly require supercomputers for their processing and analysis. Running high-throughput (HTP) bioinformatics data pipelines on supercomputing machines requires advanced Linux shell command line and scripting skills. In this two-day course, we will introduce the Linux shell and, on day one, we will show how to navigate and work with files and directories, how to combine commands to do new things, how to perform the same actions on many different files, how to filter and selectively extract data from tables, and how to find objects in files. Moreover, we will show how to connect to a remote supercomputer and how to utilise a supercomputing environment to analyse big amount of biological data, run simple shell scripts and bioinformatics pipelines. Day 2 will be wholly practical. Should you have any question, do not hesitate to contact the ELIXIR-IIB Training Team (elixir.ita.training a gmail.com ). Thank you for your interest, the Organisers Tiziana Castrignanò (CINECA, Rome, Italy) Allegra Via (ELIXIR-IIB Training Coordinator) Loredana Le Pera (ELIXIR-IIB Training Coordinator Deputy) logo_iib.png -- *ELIXIR-IIB Training * https://elixir-iib-training.github.io/website/