From elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it Fri Jul 7 19:36:40 2017 From: elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it (General ELIXIR-Italy Mailing list) Date: Fri, 7 Jul 2017 19:36:40 +0200 Subject: [ELIXIR-ITA_ml] ELIXIR Annual Report 2016 Message-ID: <89e8e0ee-f56d-a737-3055-2d2727fa0e19@ibbe.cnr.it> Cari tutti, a questo indirizzo trovate l'ELIXIR Annual Report 2016. https://drive.google.com/file/d/0B9G1T7Qh3zvCZERLWXpLczhPUTA/view?usp=sharing Buona lettura :) Saluti, Federico Z. -- ============================================ Federico Zambelli, Ph.D. ELIXIR-IIB Technical Coordinator Bioinformatics, Evolution and Comparative Genomics Lab, Dept. of Biosciences - www.bioscienze.bio University of Milano - Italy Our comforting conviction that the world makes sense rests on a secure foundation: our almost unlimited ability to ignore our ignorance. ============================================ From elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it Wed Jul 12 12:49:05 2017 From: elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it (General ELIXIR-Italy Mailing list) Date: Wed, 12 Jul 2017 12:49:05 +0200 Subject: [ELIXIR-ITA_ml] Training Course on Best practices for RNA-Seq data analysis Message-ID: <94559683-7f31-9c80-4571-90fec1765557@ibbe.cnr.it> COURSE ANNOUNCEMENT Please circulate this email to those who might be interested. ELIXIR-IIB, in collaboration with University of Salerno, Italy, is pleased to announce the upcoming training course on "Best practices for RNA-Seq data analysis". IMPORTANT DATES: Course date: 27-29 SEPTEMBER 2017 Deadline for applications: 11 September 2017 Selection will start on July 20th and those with an adequate profile will be accepted immediately, until we reach 25 participants. VENUE: Campus di Fisciano, University of Salerno, Via Giovanni Paolo II n. 132, 84084 Fisciano (SA), Italy. Full details at: https://elixir-iib-training.github.io/website/2017/09/27/RNA-seq-Salerno.html [2] [3] COURSE DESCRIPTION: The aim of this course is to get a deeper understanding of RNA-Seq experiments, providing a theoretical introduction to the data processing steps, together with practical sessions illustrating the use of the most popular data analysis TOOLS. Starting from the raw sequenced data coming from different phenotypical samples (e.g disease vs healthy control samples), genes which are differentially expressed between the two conditions are determine. COURSE OBJECTIVES Students will gain an understanding of: - experimental design - quality control - theoretical principles of RNA-Seq data analysis process - how to identify differentially regulated genes - how to identify alternative splicing events - how to identify gene fusion events - multiple testing correction - biological interpretation of RNA-seq data Should you have any question, do not hesitate to contact the ELIXIR-IIB Training Team (elixir.ita.training a gmail.com) and/or the local organiser Dr. Anna Marabotti (amarabotti a unisa.it). Thank you for your interest, the Organisers and the ELIXIR Training Team Anna Marabotti (ELIXIR Training Team and University of Salerno, Italy) Loredana Le Pera (ELIXIR Training Team and IIT, Italy) Links: ------ [1] http://www.unisa.it/docenti/annamarabotti/index [2] https://elixir-iib-training.github.io/website/2017/09/27/RNA-seq-Salerno.html [3] https://elixir-iib-training.github.io/website/2017/09/04/MachineLearning-Trento.html -- ============================================ Federico Zambelli, Ph.D. ELIXIR-IIB Technical Coordinator Bioinformatics, Evolution and Comparative Genomics Lab, Dept. of Biosciences - www.bioscienze.bio University of Milano - Italy Our comforting conviction that the world makes sense rests on a secure foundation: our almost unlimited ability to ignore our ignorance. ============================================ From elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it Tue Jul 25 10:34:11 2017 From: elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it (General ELIXIR-Italy Mailing list) Date: Tue, 25 Jul 2017 10:34:11 +0200 Subject: [ELIXIR-ITA_ml] Fwd: [ELIXIR TeC] ELIXIR Core Data Resources In-Reply-To: <3F463C87-D068-4898-BC13-5A9EF3B3E0CE@elixir-europe.org> References: <3F463C87-D068-4898-BC13-5A9EF3B3E0CE@elixir-europe.org> Message-ID: <96a8074e-179a-9ffd-5c77-00117c608167@ibiom.cnr.it> E' con grande oddisfazione che facciamo i complimenti e ringraziamo MINT (parte dell'IMEx Consortium) e MobiDB (parte di InterPro) per essere diventate le prime ELIXIR Core Data Resource italiane. Cordiali saluti, Federico -------- Messaggio Inoltrato -------- Oggetto: [ELIXIR TeC] ELIXIR Core Data Resources Data: Tue, 25 Jul 2017 09:27:37 +0100 Mittente: Niklas Blomberg A: CC: training-coordinators a elixir-europe.org, tech-coordinators a elixir-europe.org Dear all, Today we publish the initial list of ELIXIR Core Data Resources - data resources of fundamental importance to the life science community and the long-term preservation of biological data. In addition to the list of Core Data Resources, ELIXIR has compiled an initial list of Deposition Databases that it recommends for the deposition of experimental data. You can read the full announcement**in this News item . The lists are linked to from the Data Platform page , which has consequently had a lightweight review, to accommodate the new web pages. The work leading up to this release (corresponding to Work Package 3 of EXCELERATE) has been the primary focus of the Data Platform in recent months, and will continue to occupy us going forward, as we establish the selection, review and update process as a cycle, and work through the questions that this challenging but important exercise has raised. That being said, today's announcement is a landmark for the Data Platform, and ELIXIR, and I would like to thank everyone involved and in particular Jo McEntyre and Christine Durinx for their heroic efforts taking us this far! My very best regards, Niklas -------------- parte successiva -------------- _______________________________________________ Tech-coordinators mailing list Tech-coordinators a elixir-europe.org From elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it Tue Jul 25 10:37:26 2017 From: elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it (General ELIXIR-Italy Mailing list) Date: Tue, 25 Jul 2017 10:37:26 +0200 Subject: [ELIXIR-ITA_ml] Fwd: [ELIXIR TeC] ELIXIR Core Data Resources In-Reply-To: <96a8074e-179a-9ffd-5c77-00117c608167@ibiom.cnr.it> References: <3F463C87-D068-4898-BC13-5A9EF3B3E0CE@elixir-europe.org> <96a8074e-179a-9ffd-5c77-00117c608167@ibiom.cnr.it> Message-ID: Grazie! Luana On Tue, Jul 25, 2017 at 10:34 AM, General ELIXIR-Italy Mailing list < elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it> wrote: > E' con grande oddisfazione che facciamo i complimenti e ringraziamo MINT > (parte dell'IMEx Consortium) e MobiDB (parte di InterPro) per essere > diventate le prime ELIXIR Core Data Resource italiane. > > Cordiali saluti, > Federico > > > -------- Messaggio Inoltrato -------- > Oggetto: [ELIXIR TeC] ELIXIR Core Data Resources > Data: Tue, 25 Jul 2017 09:27:37 +0100 > Mittente: Niklas Blomberg > A: org> > CC: training-coordinators a elixir-europe.org, > tech-coordinators a elixir-europe.org > > > > Dear all, > > Today we publish the initial list of ELIXIR Core Data Resources < > https://www.elixir-europe.org/platforms/data/core-data-resources> - data > resources of fundamental importance to the life science community and the > long-term preservation of biological data. In addition to the list of Core > Data Resources, ELIXIR has compiled an initial list of Deposition Databases > > that it recommends for the deposition of experimental data. > > You can read the full announcement**in this News item < > https://www.elixir-europe.org/news/core-data-resources>. The lists are > linked to from the Data Platform page /platforms/data>, which has consequently had a lightweight review, to > accommodate the new web pages. > > The work leading up to this release (corresponding to Work Package 3 of > EXCELERATE) has been the primary focus of the Data Platform in recent > months, and will continue to occupy us going forward, as we establish the > selection, review and update process as a cycle, and work through the > questions that this challenging but important exercise has raised. That > being said, today's announcement is a landmark for the Data Platform, and > ELIXIR, and I would like to thank everyone involved and in particular Jo > McEntyre and Christine Durinx for their heroic efforts taking us this far! > > My very best regards, > > Niklas > > _______________________________________________ > ELIXIR-Italy ML: elixir-ita_ml a elixir-ita.cnr.it > To manage your subscription: http://srv00.area.ba.cnr.it/ > mailman/listinfo/elixir-ita_ml.elixir-ita.cnr.it > > > -- Luana Licata, PhD ELIXIR-Italy - Local Technical Coordinator (LTeC) Scientific database curator Bioinformatics and Computational Biology Unit, Dept. of Molecular Biology University of Rome Tor Vergata, Via della Ricerca Scientifica, snc 00133 Rome - ITALY http://www.moleculargenetics.it/bcb/ -------------- parte successiva -------------- Un allegato HTML è stato rimosso... URL: