From elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it Thu Jul 28 16:39:16 2016 From: elixir-ita_ml.elixir-ita.cnr.it a srv00.area.ba.cnr.it (General ELIXIR-Italy Mailing list) Date: Thu, 28 Jul 2016 16:39:16 +0200 Subject: [ELIXIR-ITA_ml] Fwd: NETTAB hackathon In-Reply-To: References: Message-ID: Cari tutti, vi inoltro la mail degli organizzatori relativa all'Hackaton organizzato da ELIXIR che si terrą in occasione di NETTAB 2016. Federico Zambelli ************************************************************************* Carissimi, sono lieto di inviarvi l'annuncio dell'hackathon. Come indicato, ci saranno due argomenti principali. Oltre a Rafael Jimenez e Jon Ison dovrebbero essere presenti Bjorn Gruning e Jacques van Helden. Abbiamo intenzione di chiedere anche a Olivier Collin e Olivier Sallou, di BioShaDock, e Yasset Perez-Riverol di BioDocker se sono interessati a partecipare. Siete invitati a registrare il vostro interesse nel documento google doc indicato. A presto. Paolo (===) Dear all, A one day bioinformatics hackathon organized by ELIXIR will be held in Rome, Italy, in occasion of the NETTAB 2016 Workshop. The hackathon will be held on Monday October 24, 2016, from 10.00 AM to 7.00 PM, the day before the workshop. See details and register at http://tinyurl.com/registryhackathon10 . Contents The hackathon will include the following two main strands: Biosoftware description using bio.tools and schema.org Deployment of bioinformatics tools and services through Docker Biosoftware description using bio.tools and schema.org This session will provide a forum for knowledge exchange, technical discussions and hacking on the ELIXIR Tools & Data Services Registry (bio.tools) and the bioschemas project (bioschemas.org), with focus on extending schema.org for bioinformatics tools in a way that is compatible with bio.tools. Participants will self-organise on the day and can pursue any tasks or discussion of interest. The expected activities and outcomes include: Understand the aims of bio.tools & bioschemas and see how you can contribute Review existing software description models in bio.tools and schema.org Map the bio.tools and schema.org models Come up with a bioschemas bioinformatics software specification and produce a candidate type for schema.org Trial mark-up of bio.tools tool cards (e.g. https://bio.tools/tool/CBS/SignalP/4.1) Explore provision of such mark-up ? for use on local sites ? as a bio.tools service Deployment of bioinformatics tools and services through Docker This strand will provide a forum for knowledge exchange, technical discussions and hacking along the following lines: Docker+Galaxy integration: deployment of bioinformatics tools and services in Galaxy through Docker, Galaxy development made easy Galaxy in Docker and Galaxy flavours: https://slides.com/bgruening/the-galaxy-docker-project/live#/ Docker-ization of ELIXIR-ITA services/tools. Docker-iRODS integration (see https://github.com/gmauro/boxed-irods) Docker-ization with layer-donning: RIP Dockerfiles, the easiest way to create efficient images without doing anything! https://slides.com/bgruening/docker-layer-donning/live#/ How to ensure compatibility between containers? Study case: integration of various NGS packages within a same docker image: sometimes not obvious to combine existing containers. Attendees Both technical & non-technical people is welcome! Register by adding your name in the following public document: http://tinyurl.com/registryhackathon10. Paolo Romano IRCCS AOU San Martino IST Genova, Italy Skype: p.romano Email: paolo.romano a hsanmartino.it - paolo.dm.romano a gmail.com ********************************************************************************